Air fryer protein zucchini muffins are a game changer when you need a snack that’s quick, satisfying, and secretly packed with veggies. These muffins are soft, slightly sweet, and loaded with flavor—all without needing a traditional oven. Using an air fryer not only speeds things up but gives the muffins a beautiful golden top and moist center every time.
In this article, we’ll go step-by-step through how to make these protein-rich muffins using simple ingredients you likely already have. Whether you’re trying to get more protein into your day, cut down on sugar, or just use up that extra zucchini in your fridge, you’re in the right place. I’ll also answer some common questions about baking with protein powder, preventing soggy muffins, and whether you can use paper liners in the air fryer.
But before we jump into the how-to, let me tell you how these muffins became a regular in my kitchen lineup.

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How I Started Making Air Fryer Protein Zucchini Muffins
Hi, I’m Jackson—and I’ve been obsessed with tweaking recipes ever since college turned me into a reluctant cook. These air fryer protein zucchini muffins came about during one of those late-night kitchen experiments when I wanted something sweet but not heavy, quick but not junky.
It all started with leftover zucchini and the thought, “What if I bake this… in the air fryer?” After falling in love with my zucchini grilled cheese, I figured zucchini could work in baking too. I added flour, a bit of sugar, some oil, and a scoop of protein—and just like that, the muffins came out perfectly moist with a light crust on top. Better yet, they were done in under 20 minutes.
I’ve made them dozens of times since, tweaking with add-ins like chopped walnuts or chocolate chips. Pairing one with a frozen zucchini smoothie became my new breakfast habit.
These muffins aren’t just good for you—they’re genuinely good. Next, let’s break down what goes into them and how you can make them your own.
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Air Fryer Protein Zucchini Muffins – Easy 4-Step Recipe Moist & Delicious
- Total Time: 27 minutes
- Yield: 4 muffins 1x
Description
Quick and moist air fryer protein zucchini muffins packed with flavor and a healthy dose of protein. Ideal for breakfast, snacks, or meal prep.
Ingredients
¾ cup all purpose flour
¼ cup +2 tablespoons granulated sugar
1 teaspoon baking powder
¼ teaspoon salt
¼–½ teaspoon ground cinnamon (optional)
¼ cup finely chopped nuts or chocolate chips (optional)
1 large egg
2½ tablespoons vegetable oil
½ cup shredded zucchini (packed, not squeezed)
3 tablespoons milk (2% or whole)
½ teaspoon vanilla
Instructions
1. In a large bowl, whisk together flour, sugar, baking powder, salt, cinnamon, and nuts or chips if using.
2. In a medium bowl, beat egg slightly and stir in oil, zucchini, milk, and vanilla.
3. Add wet ingredients to dry and stir just until combined (about 15 stirs). Do not overmix.
4. Divide batter into 4 muffin cups. Place in air fryer basket and bake at 320°F (160°C) for 15–17 minutes. Let cool before serving.
Notes
Do not overmix the batter to avoid dense muffins.
Use silicone cups to prevent liner collapse.
Add protein powder by replacing 2 tablespoons of flour.
- Prep Time: 10 minutes
- Cook Time: 17 minutes
- Category: Snacks
- Method: Air Fryer
- Cuisine: American
Nutrition
- Serving Size: 1 muffin
- Calories: 148
- Sugar: 9g
- Sodium: 108mg
- Fat: 6g
- Saturated Fat: 0.5g
- Unsaturated Fat: 5g
- Trans Fat: 0g
- Carbohydrates: 19g
- Fiber: 1g
- Protein: 6g
- Cholesterol: 36mg
Keywords: air fryer protein zucchini muffins, healthy zucchini muffins, protein muffins, easy air fryer recipe
Best Ingredients for Air Fryer Protein Zucchini Muffins
When it comes to making air fryer protein zucchini muffins, using the right mix of ingredients makes all the difference. You don’t need anything fancy—just basic pantry staples with a few smart additions to keep the muffins moist, flavorful, and protein-rich.
Start with all-purpose flour for a balanced texture. If you’re looking for a lower-carb twist, feel free to swap in part almond flour or oat flour. Granulated sugar gives a gentle sweetness, but if you’re aiming for less refined options, coconut sugar or maple syrup work well too—just watch the moisture levels.

Zucchini is key here. Always pack the shredded zucchini but don’t squeeze out the moisture. That water content helps keep your air fryer protein zucchini muffins soft and tender inside. It’s what gives them that melt-in-your-mouth quality.
For protein, you can either keep it simple with the egg (which offers great structure and protein) or add a scoop of your favorite unflavored or vanilla protein powder. I’ve tested both and found that just one scoop blends perfectly without drying out the muffins. If you’re curious about using protein powder in baking, my chocolate banana protein smoothie guide covers similar tips for keeping flavors balanced.
A little oil—sunflower or corn oil—adds moisture without overpowering the other ingredients. Vanilla and cinnamon round out the flavor, while milk (2% or whole) keeps the batter silky.
Optional Add-ins That Make a Difference
Air fryer protein zucchini muffins are incredibly versatile. Want more texture? Toss in a handful of chopped pecans, walnuts, or almonds. Craving a sweeter muffin? A sprinkle of dark chocolate chips adds a rich finish that still feels wholesome.
If you enjoy a little spice, cinnamon brings warmth without masking the zucchini’s mild flavor. These muffins also pair beautifully with nut butters or even a dollop of cottage cheese on top—a trick I picked up from making 5-ingredient cottage cheese bread.
Feeling experimental? Add shredded coconut or swap milk for Greek yogurt to bump the protein even further. You could even try mixing in some rolled oats or using gluten-free flour like I do in my gluten-free peanut butter cookies.
Remember, don’t overmix—just about 15 stirs will do it. Overworking the batter can lead to dense muffins, and that’s the last thing you want from your perfectly portioned air fryer protein zucchini muffins.
How to Use the Air Fryer for Muffins
Making air fryer protein zucchini muffins is all about timing, temperature, and the right setup. One of the best parts of this recipe is how the air fryer creates a slightly crisp top while keeping the center moist. But to get perfect results every time, you’ll need to pay attention to a few key details.
First, always preheat your air fryer for about 2–3 minutes before placing your muffins in the basket. This helps ensure even cooking. Set the air fryer to 320°F (160°C)—a gentle heat that bakes the muffins through without drying them out.
Now let’s talk about cups. Can you use paper muffin liners in the air fryer? Yes, but only if they’re nestled inside silicone or metal molds. Otherwise, they can shift, fold, or even burn due to the circulating heat. I recommend using silicone muffin cups to keep the batter contained and shaped well. They also make cleanup a breeze.
Divide your batter evenly between four cups and place them in a single layer in the basket. Don’t overcrowd—air needs to circulate for even baking. Most air fryer protein zucchini muffins take 15 to 17 minutes to bake. Insert a toothpick in the center—if it comes out with a few moist crumbs, they’re done.
For anyone just getting into air fryer baking, my air fryer buffalo cauliflower bites are a great beginner-friendly recipe to practice timing and temperature control.
Common Air Fryer Mistakes to Avoid
Even though air fryer protein zucchini muffins are simple to make, a few easy-to-miss mistakes can ruin the texture or shape. The most common issue? Soggy muffins. This often happens when the zucchini is too wet or the muffins are undercooked. Always pack your shredded zucchini but skip squeezing it unless it’s overly juicy.
Overmixing is another trap. Stirring too much activates the gluten in flour, resulting in dense or rubbery muffins. You want just enough mixing to combine the wet and dry ingredients—about 15 stirs.
Spacing matters too. Make sure your muffins aren’t touching inside the basket. Crowding can lead to uneven baking or pale sides. And don’t forget to check your muffins around the 13-minute mark. Air fryers vary slightly, and a minute too long can take your muffins from moist to dry in no time.
If you’ve had issues with baking in general, give 5-ingredient tater tot casserole a try for a more forgiving air fryer dish while you get the hang of baking.
With the air fryer technique mastered, next we’ll talk about storing, reheating, and customizing your air fryer protein zucchini muffins to fit your lifestyle or dietary goals.
How to Store and Reheat Air Fryer Protein Zucchini Muffins
One of the reasons I keep making air fryer protein zucchini muffins week after week is how well they store and reheat. They’re the kind of snack that fits easily into busy schedules, whether you’re meal-prepping for the week or grabbing something post-workout.
Once your air fryer protein zucchini muffins have cooled completely, store them in an airtight container. They’ll stay fresh at room temperature for about two days. For longer storage—up to five days—pop them in the fridge. To prevent sogginess, place a paper towel underneath the muffins to soak up excess moisture.
Freezing is also a great option. Lay your air fryer protein zucchini muffins on a baking sheet and freeze them until firm. Then transfer them to a freezer-safe bag. This way, you can take out one or two at a time. They’ll stay good for up to three months and reheat beautifully.
When you’re ready to enjoy them again, reheat your air fryer protein zucchini muffins right in the air fryer at 300°F for 2–3 minutes. It brings back that soft inside and gently crisp top—better than microwaving. Though if you’re in a rush, a 20-second microwave blast works in a pinch.
I love pairing these with simple meals like my Mexican street corn chicken bowls or enjoying them with a post-lunch smoothie.
Customizing Air Fryer Protein Zucchini Muffins for Your Diet
The beauty of air fryer protein zucchini muffins is how customizable they are. Want them gluten-free? Swap the flour for a 1:1 gluten-free blend, just like I do in my gluten-free peanut butter cookies. You’ll still get that tender crumb without any gluten.
Need a dairy-free version? Use almond milk and replace the egg with a flax egg. Your air fryer protein zucchini muffins will stay just as moist and delicious.
If you’re after more protein, add a scoop of your favorite powder. Vanilla or unflavored works best. Just cut back a bit on the flour—about 2 tablespoons less—to keep the batter from getting too thick. This tip also applies if you plan to adapt this recipe into a loaf, like my blueberry zucchini bread, which uses a similar moist, veggie-packed base.
Want a sweeter touch? Add a handful of mini chocolate chips or chopped nuts. If you’re reducing sugar, try mashed banana or applesauce for natural sweetness. These swaps are simple, but they keep the texture of air fryer protein zucchini muffins just right.
For breakfast, snack time, or even dessert, these muffins check all the boxes—nutritious, protein-packed, and totally satisfying.

Conclusion
Air fryer protein zucchini muffins are the kind of recipe that sticks with you—not just because they’re delicious, but because they’re practical. From rushed mornings to healthy afternoon cravings, these muffins deliver protein, flavor, and convenience in one simple bake.
For me, they’ve become more than a snack—they’re a part of my weekly routine, a quick fix that never feels like settling. Whether you stick to the basic recipe or play around with add-ins and swaps, air fryer protein zucchini muffins give you a dependable, healthy option that doesn’t sacrifice taste.
So grab a zucchini, heat up the air fryer, and make a batch today. You might just find yourself coming back to them again and again.
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Frequently Asked Questions About Air Fryer Protein Zucchini Muffins
Can I add protein powder to zucchini muffins?
Absolutely. Adding protein powder is one of the easiest ways to boost the nutritional value of air fryer protein zucchini muffins. Just make sure to reduce the flour by a couple of tablespoons to balance the dry ingredients. Use a high-quality whey or plant-based powder with a neutral or vanilla flavor to keep the taste on point.
Can I add protein powder to zucchini bread?
Yes, and it works similarly to muffins. When adapting zucchini bread recipes like my blueberry zucchini bread, you can add one scoop of protein powder per loaf. Again, cut back slightly on flour and don’t overmix to keep the texture moist—not gummy.
Why are my zucchini muffins soggy?
Soggy air fryer protein zucchini muffins usually come from excess moisture in the zucchini. While you want to keep some of that natural water to maintain softness, avoid overly watery zucchini. If your shredded zucchini is dripping, lightly blot it with paper towel—don’t squeeze it completely dry. Also, check your bake time. Undercooked muffins can look done on top but remain wet inside. Always test with a toothpick in the center.
Can I use paper muffin cups in an air fryer?
Yes, but with caution. Paper liners tend to shift or fold in air fryer baskets due to circulating air. For the best results, place paper cups inside silicone or metal molds. This helps your air fryer protein zucchini muffins hold shape and prevents liners from flying around. Silicone muffin cups are my go-to—they’re sturdy, reusable, and perfect for even baking.